diff --git a/cmd/all.go b/cmd/all.go
index f411e1a..ac0a85e 100644
--- a/cmd/all.go
+++ b/cmd/all.go
@@ -11,7 +11,7 @@ import (
 	"github.com/Snider/Borg/pkg/compress"
 	"github.com/Snider/Borg/pkg/datanode"
 	"github.com/Snider/Borg/pkg/github"
-	"github.com/Snider/Borg/pkg/matrix"
+	"github.com/Snider/Borg/pkg/tim"
 	"github.com/Snider/Borg/pkg/ui"
 	"github.com/Snider/Borg/pkg/vcs"
 	"github.com/spf13/cobra"
@@ -31,6 +31,10 @@ func NewAllCmd() *cobra.Command {
 			format, _ := cmd.Flags().GetString("format")
 			compression, _ := cmd.Flags().GetString("compression")
 
+			if format != "datanode" && format != "tim" {
+				return fmt.Errorf("invalid format: %s (must be 'datanode' or 'tim')", format)
+			}
+
 			owner, err := parseGithubOwner(url)
 			if err != nil {
 				return err
@@ -98,12 +102,12 @@ func NewAllCmd() *cobra.Command {
 			}
 
 			var data []byte
-			if format == "matrix" {
-				matrix, err := matrix.FromDataNode(allDataNodes)
+			if format == "tim" {
+				t, err := tim.FromDataNode(allDataNodes)
 				if err != nil {
 					return fmt.Errorf("error creating matrix: %w", err)
 				}
-				data, err = matrix.ToTar()
+				data, err = t.ToTar()
 				if err != nil {
 					return fmt.Errorf("error serializing matrix: %w", err)
 				}
@@ -119,6 +123,13 @@ func NewAllCmd() *cobra.Command {
 				return fmt.Errorf("error compressing data: %w", err)
 			}
 
+			if outputFile == "" {
+				outputFile = "all." + format
+				if compression != "none" {
+					outputFile += "." + compression
+				}
+			}
+
 			err = os.WriteFile(outputFile, compressedData, 0644)
 			if err != nil {
 				return fmt.Errorf("error writing DataNode to file: %w", err)
@@ -129,8 +140,8 @@ func NewAllCmd() *cobra.Command {
 			return nil
 		},
 	}
-	allCmd.PersistentFlags().String("output", "all.dat", "Output file for the DataNode")
-	allCmd.PersistentFlags().String("format", "datanode", "Output format (datanode or matrix)")
+	allCmd.PersistentFlags().String("output", "", "Output file for the DataNode")
+	allCmd.PersistentFlags().String("format", "datanode", "Output format (datanode or tim)")
 	allCmd.PersistentFlags().String("compression", "none", "Compression format (none, gz, or xz)")
 	return allCmd
 }
diff --git a/cmd/collect_github_repo.go b/cmd/collect_github_repo.go
index 9fb5f84..02dfdb3 100644
--- a/cmd/collect_github_repo.go
+++ b/cmd/collect_github_repo.go
@@ -6,7 +6,7 @@ import (
 	"os"
 
 	"github.com/Snider/Borg/pkg/compress"
-	"github.com/Snider/Borg/pkg/matrix"
+	"github.com/Snider/Borg/pkg/tim"
 	"github.com/Snider/Borg/pkg/ui"
 	"github.com/Snider/Borg/pkg/vcs"
 
@@ -35,8 +35,8 @@ func NewCollectGithubRepoCmd() *cobra.Command {
 			format, _ := cmd.Flags().GetString("format")
 			compression, _ := cmd.Flags().GetString("compression")
 
-			if format != "datanode" && format != "matrix" {
-				return fmt.Errorf("invalid format: %s (must be 'datanode' or 'matrix')", format)
+			if format != "datanode" && format != "tim" {
+				return fmt.Errorf("invalid format: %s (must be 'datanode' or 'tim')", format)
 			}
 			if compression != "none" && compression != "gz" && compression != "xz" {
 				return fmt.Errorf("invalid compression: %s (must be 'none', 'gz', or 'xz')", compression)
@@ -58,12 +58,12 @@ func NewCollectGithubRepoCmd() *cobra.Command {
 			}
 
 			var data []byte
-			if format == "matrix" {
-				matrix, err := matrix.FromDataNode(dn)
+			if format == "tim" {
+				t, err := tim.FromDataNode(dn)
 				if err != nil {
 					return fmt.Errorf("error creating matrix: %w", err)
 				}
-				data, err = matrix.ToTar()
+				data, err = t.ToTar()
 				if err != nil {
 					return fmt.Errorf("error serializing matrix: %w", err)
 				}
@@ -96,7 +96,7 @@ func NewCollectGithubRepoCmd() *cobra.Command {
 		},
 	}
 	cmd.Flags().String("output", "", "Output file for the DataNode")
-	cmd.Flags().String("format", "datanode", "Output format (datanode or matrix)")
+	cmd.Flags().String("format", "datanode", "Output format (datanode or tim)")
 	cmd.Flags().String("compression", "none", "Compression format (none, gz, or xz)")
 	return cmd
 }
diff --git a/cmd/collect_pwa.go b/cmd/collect_pwa.go
index 649516a..ee2fc6a 100644
--- a/cmd/collect_pwa.go
+++ b/cmd/collect_pwa.go
@@ -5,7 +5,7 @@ import (
 	"os"
 
 	"github.com/Snider/Borg/pkg/compress"
-	"github.com/Snider/Borg/pkg/matrix"
+	"github.com/Snider/Borg/pkg/tim"
 	"github.com/Snider/Borg/pkg/pwa"
 	"github.com/Snider/Borg/pkg/ui"
 
@@ -45,7 +45,7 @@ Example:
 	}
 	c.Flags().String("uri", "", "The URI of the PWA to collect")
 	c.Flags().String("output", "", "Output file for the DataNode")
-	c.Flags().String("format", "datanode", "Output format (datanode or matrix)")
+	c.Flags().String("format", "datanode", "Output format (datanode or tim)")
 	c.Flags().String("compression", "none", "Compression format (none, gz, or xz)")
 	return c
 }
@@ -57,8 +57,8 @@ func CollectPWA(client pwa.PWAClient, pwaURL string, outputFile string, format s
 	if pwaURL == "" {
 		return "", fmt.Errorf("uri is required")
 	}
-	if format != "datanode" && format != "matrix" {
-		return "", fmt.Errorf("invalid format: %s (must be 'datanode' or 'matrix')", format)
+	if format != "datanode" && format != "tim" {
+		return "", fmt.Errorf("invalid format: %s (must be 'datanode' or 'tim')", format)
 	}
 	if compression != "none" && compression != "gz" && compression != "xz" {
 		return "", fmt.Errorf("invalid compression: %s (must be 'none', 'gz', or 'xz')", compression)
@@ -78,12 +78,12 @@ func CollectPWA(client pwa.PWAClient, pwaURL string, outputFile string, format s
 	}
 
 	var data []byte
-	if format == "matrix" {
-		matrix, err := matrix.FromDataNode(dn)
+	if format == "tim" {
+		t, err := tim.FromDataNode(dn)
 		if err != nil {
 			return "", fmt.Errorf("error creating matrix: %w", err)
 		}
-		data, err = matrix.ToTar()
+		data, err = t.ToTar()
 		if err != nil {
 			return "", fmt.Errorf("error serializing matrix: %w", err)
 		}
diff --git a/cmd/collect_website.go b/cmd/collect_website.go
index d6bf56e..75f5cd2 100644
--- a/cmd/collect_website.go
+++ b/cmd/collect_website.go
@@ -6,7 +6,7 @@ import (
 
 	"github.com/schollz/progressbar/v3"
 	"github.com/Snider/Borg/pkg/compress"
-	"github.com/Snider/Borg/pkg/matrix"
+	"github.com/Snider/Borg/pkg/tim"
 	"github.com/Snider/Borg/pkg/ui"
 	"github.com/Snider/Borg/pkg/website"
 
@@ -37,6 +37,10 @@ func NewCollectWebsiteCmd() *cobra.Command {
 			format, _ := cmd.Flags().GetString("format")
 			compression, _ := cmd.Flags().GetString("compression")
 
+			if format != "datanode" && format != "tim" {
+				return fmt.Errorf("invalid format: %s (must be 'datanode' or 'tim')", format)
+			}
+
 			prompter := ui.NewNonInteractivePrompter(ui.GetWebsiteQuote)
 			prompter.Start()
 			defer prompter.Stop()
@@ -51,12 +55,12 @@ func NewCollectWebsiteCmd() *cobra.Command {
 			}
 
 			var data []byte
-			if format == "matrix" {
-				matrix, err := matrix.FromDataNode(dn)
+			if format == "tim" {
+				t, err := tim.FromDataNode(dn)
 				if err != nil {
 					return fmt.Errorf("error creating matrix: %w", err)
 				}
-				data, err = matrix.ToTar()
+				data, err = t.ToTar()
 				if err != nil {
 					return fmt.Errorf("error serializing matrix: %w", err)
 				}
@@ -90,7 +94,7 @@ func NewCollectWebsiteCmd() *cobra.Command {
 	}
 	collectWebsiteCmd.PersistentFlags().String("output", "", "Output file for the DataNode")
 	collectWebsiteCmd.PersistentFlags().Int("depth", 2, "Recursion depth for downloading")
-	collectWebsiteCmd.PersistentFlags().String("format", "datanode", "Output format (datanode or matrix)")
+	collectWebsiteCmd.PersistentFlags().String("format", "datanode", "Output format (datanode or tim)")
 	collectWebsiteCmd.PersistentFlags().String("compression", "none", "Compression format (none, gz, or xz)")
 	return collectWebsiteCmd
 }
diff --git a/cmd/compile.go b/cmd/compile.go
index 1b01edd..f9f2b3e 100644
--- a/cmd/compile.go
+++ b/cmd/compile.go
@@ -5,7 +5,7 @@ import (
 	"os"
 	"strings"
 
-	"github.com/Snider/Borg/pkg/matrix"
+	"github.com/Snider/Borg/pkg/tim"
 	"github.com/spf13/cobra"
 )
 
@@ -17,14 +17,14 @@ var compileCmd = NewCompileCmd()
 func NewCompileCmd() *cobra.Command {
 	compileCmd := &cobra.Command{
 		Use:   "compile",
-		Short: "Compile a Borgfile into a Terminal Isolation Matrix.",
+		Short: "Compile a Borgfile into a TIM.",
 		RunE: func(cmd *cobra.Command, args []string) error {
 			content, err := os.ReadFile(borgfile)
 			if err != nil {
 				return err
 			}
 
-			m, err := matrix.New()
+			m, err := tim.New()
 			if err != nil {
 				return err
 			}
@@ -61,7 +61,7 @@ func NewCompileCmd() *cobra.Command {
 		},
 	}
 	compileCmd.Flags().StringVarP(&borgfile, "file", "f", "Borgfile", "Path to the Borgfile.")
-	compileCmd.Flags().StringVarP(&output, "output", "o", "a.matrix", "Path to the output matrix file.")
+	compileCmd.Flags().StringVarP(&output, "output", "o", "a.tim", "Path to the output TIM file.")
 	return compileCmd
 }
 
diff --git a/cmd/run.go b/cmd/run.go
index d57d1c9..e1069e6 100644
--- a/cmd/run.go
+++ b/cmd/run.go
@@ -1,7 +1,7 @@
 package cmd
 
 import (
-	"github.com/Snider/Borg/pkg/matrix"
+	"github.com/Snider/Borg/pkg/tim"
 	"github.com/spf13/cobra"
 )
 
@@ -9,11 +9,11 @@ var runCmd = NewRunCmd()
 
 func NewRunCmd() *cobra.Command {
 	return &cobra.Command{
-		Use:   "run [matrix file]",
-		Short: "Run a Terminal Isolation Matrix.",
+		Use:   "run [tim file]",
+		Short: "Run a TIM.",
 		Args:  cobra.ExactArgs(1),
 		RunE: func(cmd *cobra.Command, args []string) error {
-			return matrix.Run(args[0])
+			return tim.Run(args[0])
 		},
 	}
 }
diff --git a/cmd/run_test.go b/cmd/run_test.go
index 051e561..dfe58cd 100644
--- a/cmd/run_test.go
+++ b/cmd/run_test.go
@@ -7,16 +7,16 @@ import (
 	"path/filepath"
 	"testing"
 
-	"github.com/Snider/Borg/pkg/matrix"
+	"github.com/Snider/Borg/pkg/tim"
 )
 
 func TestRunCmd_Good(t *testing.T) {
-	// Create a dummy matrix file.
-	matrixPath := createDummyMatrix(t)
+	// Create a dummy tim file.
+	timPath := createDummyTIM(t)
 
-	// Mock the exec.Command function in the matrix package.
-	origExecCommand := matrix.ExecCommand
-	matrix.ExecCommand = func(command string, args ...string) *exec.Cmd {
+	// Mock the exec.Command function in the tim package.
+	origExecCommand := tim.ExecCommand
+	tim.ExecCommand = func(command string, args ...string) *exec.Cmd {
 		cs := []string{"-test.run=TestHelperProcess", "--", command}
 		cs = append(cs, args...)
 		cmd := exec.Command(os.Args[0], cs...)
@@ -24,13 +24,13 @@ func TestRunCmd_Good(t *testing.T) {
 		return cmd
 	}
 	t.Cleanup(func() {
-		matrix.ExecCommand = origExecCommand
+		tim.ExecCommand = origExecCommand
 	})
 
 	// Run the run command.
 	rootCmd := NewRootCmd()
 	rootCmd.AddCommand(GetRunCmd())
-	_, err := executeCommand(rootCmd, "run", matrixPath)
+	_, err := executeCommand(rootCmd, "run", timPath)
 	if err != nil {
 		t.Fatalf("run command failed: %v", err)
 	}
@@ -41,7 +41,7 @@ func TestRunCmd_Bad(t *testing.T) {
 		// Run the run command with a non-existent file.
 		rootCmd := NewRootCmd()
 		rootCmd.AddCommand(GetRunCmd())
-		_, err := executeCommand(rootCmd, "run", "/non/existent/file.matrix")
+		_, err := executeCommand(rootCmd, "run", "/non/existent/file.tim")
 		if err == nil {
 			t.Fatal("run command should have failed but did not")
 		}
@@ -49,37 +49,37 @@ func TestRunCmd_Bad(t *testing.T) {
 }
 
 func TestRunCmd_Ugly(t *testing.T) {
-	t.Run("Invalid matrix file", func(t *testing.T) {
-		// Create an invalid (non-tar) matrix file.
+	t.Run("Invalid tim file", func(t *testing.T) {
+		// Create an invalid (non-tar) tim file.
 		tempDir := t.TempDir()
-		matrixPath := filepath.Join(tempDir, "invalid.matrix")
-		err := os.WriteFile(matrixPath, []byte("this is not a tar file"), 0644)
+		timPath := filepath.Join(tempDir, "invalid.tim")
+		err := os.WriteFile(timPath, []byte("this is not a tar file"), 0644)
 		if err != nil {
-			t.Fatalf("failed to create invalid matrix file: %v", err)
+			t.Fatalf("failed to create invalid tim file: %v", err)
 		}
 
 		// Run the run command.
 		rootCmd := NewRootCmd()
 		rootCmd.AddCommand(GetRunCmd())
-		_, err = executeCommand(rootCmd, "run", matrixPath)
+		_, err = executeCommand(rootCmd, "run", timPath)
 		if err == nil {
 			t.Fatal("run command should have failed but did not")
 		}
 	})
 }
 
-// createDummyMatrix creates a valid, empty matrix file for testing.
-func createDummyMatrix(t *testing.T) string {
+// createDummyTIM creates a valid, empty tim file for testing.
+func createDummyTIM(t *testing.T) string {
 	t.Helper()
 	tempDir := t.TempDir()
-	matrixPath := filepath.Join(tempDir, "test.matrix")
-	matrixFile, err := os.Create(matrixPath)
+	timPath := filepath.Join(tempDir, "test.tim")
+	timFile, err := os.Create(timPath)
 	if err != nil {
-		t.Fatalf("failed to create dummy matrix file: %v", err)
+		t.Fatalf("failed to create dummy tim file: %v", err)
 	}
-	defer matrixFile.Close()
+	defer timFile.Close()
 
-	tw := tar.NewWriter(matrixFile)
+	tw := tar.NewWriter(timFile)
 
 	// Add a dummy config.json. This is not a valid config, but it's enough to test the run command.
 	configContent := []byte(`{}`)
@@ -108,5 +108,5 @@ func createDummyMatrix(t *testing.T) string {
 	if err := tw.Close(); err != nil {
 		t.Fatalf("failed to close tar writer: %v", err)
 	}
-	return matrixPath
+	return timPath
 }
diff --git a/examples/create_matrix_programmatically/main.go b/examples/create_matrix_programmatically/main.go
index 64e2fe3..5b8ad2a 100644
--- a/examples/create_matrix_programmatically/main.go
+++ b/examples/create_matrix_programmatically/main.go
@@ -5,31 +5,31 @@ import (
 	"os"
 
 	"github.com/Snider/Borg/pkg/datanode"
-	"github.com/Snider/Borg/pkg/matrix"
+	"github.com/Snider/Borg/pkg/tim"
 )
 
 func main() {
 	// Create a new DataNode to hold the root filesystem.
 	dn := datanode.New()
-	dn.AddData("hello.txt", []byte("Hello from within the matrix!"))
+	dn.AddData("hello.txt", []byte("Hello from within the TIM!"))
 
 	// Create a new TerminalIsolationMatrix from the DataNode.
-	m, err := matrix.FromDataNode(dn)
+	m, err := tim.FromDataNode(dn)
 	if err != nil {
-		log.Fatalf("Failed to create matrix: %v", err)
+		log.Fatalf("Failed to create TIM: %v", err)
 	}
 
-	// Serialize the matrix to a tarball.
+	// Serialize the TIM to a tarball.
 	tarball, err := m.ToTar()
 	if err != nil {
-		log.Fatalf("Failed to serialize matrix to tar: %v", err)
+		log.Fatalf("Failed to serialize TIM to tar: %v", err)
 	}
 
 	// Write the tarball to a file.
-	err = os.WriteFile("programmatic.matrix", tarball, 0644)
+	err = os.WriteFile("programmatic.tim", tarball, 0644)
 	if err != nil {
-		log.Fatalf("Failed to write matrix file: %v", err)
+		log.Fatalf("Failed to write TIM file: %v", err)
 	}
 
-	log.Println("Successfully created programmatic.matrix")
+	log.Println("Successfully created programmatic.tim")
 }
diff --git a/examples/run_matrix_programmatically/main.go b/examples/run_matrix_programmatically/main.go
index 2204c6e..5ad2430 100644
--- a/examples/run_matrix_programmatically/main.go
+++ b/examples/run_matrix_programmatically/main.go
@@ -3,16 +3,16 @@ package main
 import (
 	"log"
 
-	"github.com/Snider/Borg/pkg/matrix"
+	"github.com/Snider/Borg/pkg/tim"
 )
 
 func main() {
-	log.Println("Executing matrix with Borg...")
+	log.Println("Executing TIM with Borg...")
 
-	// Execute the matrix using the Borg package.
-	if err := matrix.Run("programmatic.matrix"); err != nil {
-		log.Fatalf("Failed to run matrix: %v", err)
+	// Execute the TIM using the Borg package.
+	if err := tim.Run("programmatic.tim"); err != nil {
+		log.Fatalf("Failed to run TIM: %v", err)
 	}
 
-	log.Println("Matrix execution finished.")
+	log.Println("TIM execution finished.")
 }
diff --git a/pkg/compress/compress.go b/pkg/compress/compress.go
index 07e4d28..a104c61 100644
--- a/pkg/compress/compress.go
+++ b/pkg/compress/compress.go
@@ -8,7 +8,17 @@ import (
 	"github.com/ulikunitz/xz"
 )
 
-// Compress compresses data using the specified format.
+// Compress compresses a byte slice using the specified format.
+// Supported formats are "gz" and "xz". If an unsupported format is provided,
+// the original data is returned unmodified.
+//
+// Example:
+//
+//	compressedData, err := compress.Compress([]byte("hello world"), "gz")
+//	if err != nil {
+//		// handle error
+//	}
+//	// compressedData now holds the gzipped version of "hello world"
 func Compress(data []byte, format string) ([]byte, error) {
 	var buf bytes.Buffer
 	var writer io.WriteCloser
@@ -39,7 +49,17 @@ func Compress(data []byte, format string) ([]byte, error) {
 	return buf.Bytes(), nil
 }
 
-// Decompress decompresses data, detecting the format automatically.
+// Decompress decompresses a byte slice, automatically detecting the compression
+// format (gz or xz) by inspecting the header magic bytes. If the data is not
+// compressed in a recognized format, it is returned unmodified.
+//
+// Example:
+//
+//	decompressedData, err := compress.Decompress(compressedData)
+//	if err != nil {
+//		// handle error
+//	}
+//	// decompressedData now holds the original uncompressed data
 func Decompress(data []byte) ([]byte, error) {
 	// Check for gzip header
 	if len(data) > 2 && data[0] == 0x1f && data[1] == 0x8b {
diff --git a/pkg/datanode/datanode.go b/pkg/datanode/datanode.go
index a793f02..46bc3c3 100644
--- a/pkg/datanode/datanode.go
+++ b/pkg/datanode/datanode.go
@@ -12,17 +12,37 @@ import (
 	"time"
 )
 
-// DataNode is an in-memory filesystem that is compatible with fs.FS.
+// DataNode represents an in-memory filesystem, compatible with the standard
+// library's io/fs.FS interface. It stores files and their contents in memory,
+// making it useful for manipulating collections of files, such as those from
+// a tar archive or a Git repository, without writing them to disk.
 type DataNode struct {
 	files map[string]*dataFile
 }
 
-// New creates a new, empty DataNode.
+// New creates and returns a new, empty DataNode. This is the starting point
+// for building an in-memory filesystem.
+//
+// Example:
+//
+//	dn := datanode.New()
 func New() *DataNode {
 	return &DataNode{files: make(map[string]*dataFile)}
 }
 
-// FromTar creates a new DataNode from a tarball.
+// FromTar creates a new DataNode by reading a tar archive. The tarball's
+// contents are unpacked into the in-memory filesystem.
+//
+// Example:
+//
+//	tarData, err := os.ReadFile("my-archive.tar")
+//	if err != nil {
+//		// handle error
+//	}
+//	dn, err := datanode.FromTar(tarData)
+//	if err != nil {
+//		// handle error
+//	}
 func FromTar(tarball []byte) (*DataNode, error) {
 	dn := New()
 	tarReader := tar.NewReader(bytes.NewReader(tarball))
@@ -48,7 +68,20 @@ func FromTar(tarball []byte) (*DataNode, error) {
 	return dn, nil
 }
 
-// ToTar serializes the DataNode to a tarball.
+// ToTar serializes the DataNode into a tar archive. This is useful for
+// saving the in-memory filesystem to disk or for transmitting it over a
+// network.
+//
+// Example:
+//
+//	tarData, err := dn.ToTar()
+//	if err != nil {
+//		// handle error
+//	}
+//	err = os.WriteFile("my-archive.tar", tarData, 0644)
+//	if err != nil {
+//		// handle error
+//	}
 func (d *DataNode) ToTar() ([]byte, error) {
 	buf := new(bytes.Buffer)
 	tw := tar.NewWriter(buf)
@@ -75,7 +108,14 @@ func (d *DataNode) ToTar() ([]byte, error) {
 	return buf.Bytes(), nil
 }
 
-// AddData adds a file to the DataNode.
+// AddData adds a file to the DataNode with the given name and content. If the
+// file already exists, it will be overwritten. Directory paths are created
+// implicitly and do not need to be added separately.
+//
+// Example:
+//
+//	dn.AddData("my-file.txt", []byte("hello world"))
+//	dn.AddData("my-dir/my-other-file.txt", []byte("hello again"))
 func (d *DataNode) AddData(name string, content []byte) {
 	name = strings.TrimPrefix(name, "/")
 	if name == "" {
@@ -93,7 +133,21 @@ func (d *DataNode) AddData(name string, content []byte) {
 	}
 }
 
-// Open opens a file from the DataNode.
+// Open opens a file from the DataNode for reading. It returns an fs.File,
+// which can be used with standard library functions that operate on files.
+// This method is part of the fs.FS interface implementation.
+//
+// Example:
+//
+//	file, err := dn.Open("my-file.txt")
+//	if err != nil {
+//		// handle error
+//	}
+//	defer file.Close()
+//	content, err := io.ReadAll(file)
+//	if err != nil {
+//		// handle error
+//	}
 func (d *DataNode) Open(name string) (fs.File, error) {
 	name = strings.TrimPrefix(name, "/")
 	if file, ok := d.files[name]; ok {
@@ -112,7 +166,18 @@ func (d *DataNode) Open(name string) (fs.File, error) {
 	return nil, fs.ErrNotExist
 }
 
-// ReadDir reads and returns all directory entries for the named directory.
+// ReadDir reads the named directory and returns a list of directory entries.
+// This method is part of the fs.ReadDirFS interface implementation.
+//
+// Example:
+//
+//	entries, err := dn.ReadDir("my-dir")
+//	if err != nil {
+//		// handle error
+//	}
+//	for _, entry := range entries {
+//		fmt.Println(entry.Name())
+//	}
 func (d *DataNode) ReadDir(name string) ([]fs.DirEntry, error) {
 	name = strings.TrimPrefix(name, "/")
 	if name == "." {
@@ -165,7 +230,16 @@ func (d *DataNode) ReadDir(name string) ([]fs.DirEntry, error) {
 	return entries, nil
 }
 
-// Stat returns the FileInfo structure describing file.
+// Stat returns the fs.FileInfo structure describing the named file or directory.
+// This method is part of the fs.StatFS interface implementation.
+//
+// Example:
+//
+//	info, err := dn.Stat("my-file.txt")
+//	if err != nil {
+//		// handle error
+//	}
+//	fmt.Println(info.Size())
 func (d *DataNode) Stat(name string) (fs.FileInfo, error) {
 	name = strings.TrimPrefix(name, "/")
 	if file, ok := d.files[name]; ok {
@@ -185,12 +259,31 @@ func (d *DataNode) Stat(name string) (fs.FileInfo, error) {
 	return nil, fs.ErrNotExist
 }
 
-// ExistsOptions allows customizing the Exists check.
+// ExistsOptions provides options for customizing the behavior of the Exists
+// method.
 type ExistsOptions struct {
+	// WantType specifies the desired file type (e.g., fs.ModeDir for a
+	// directory). If the file exists but is not of the desired type, Exists
+	// will return false.
 	WantType fs.FileMode
 }
 
-// Exists returns true if the file or directory exists.
+// Exists checks if a file or directory at the given path exists in the DataNode.
+// It can optionally check if the file is of a specific type (e.g., a directory).
+//
+// Example:
+//
+//	// Check if a file exists
+//	exists, err := dn.Exists("my-file.txt")
+//	if err != nil {
+//		// handle error
+//	}
+//
+//	// Check if a directory exists
+//	exists, err = dn.Exists("my-dir", datanode.ExistsOptions{WantType: fs.ModeDir})
+//	if err != nil {
+//		// handle error
+//	}
 func (d *DataNode) Exists(name string, opts ...ExistsOptions) (bool, error) {
 	info, err := d.Stat(name)
 	if err != nil {
@@ -210,14 +303,30 @@ func (d *DataNode) Exists(name string, opts ...ExistsOptions) (bool, error) {
 	return true, nil
 }
 
-// WalkOptions allows customizing the Walk behavior.
+// WalkOptions provides options for customizing the behavior of the Walk method.
 type WalkOptions struct {
-	MaxDepth   int
-	Filter     func(path string, d fs.DirEntry) bool
+	// MaxDepth limits the depth of the walk. A value of 0 means no limit.
+	MaxDepth int
+	// Filter is a function that can be used to skip files or directories. If
+	// the function returns false for an entry, that entry is skipped. If the
+	// entry is a directory, the entire subdirectory is skipped.
+	Filter func(path string, d fs.DirEntry) bool
+	// SkipErrors causes the walk to continue when an error is encountered.
 	SkipErrors bool
 }
 
-// Walk recursively descends the file tree rooted at root, calling fn for each file or directory.
+// Walk walks the in-memory file tree rooted at root, calling fn for each file or
+// directory in the tree, including root. The walk is depth-first.
+//
+// Example:
+//
+//	err := dn.Walk(".", func(path string, d fs.DirEntry, err error) error {
+//		if err != nil {
+//			return err
+//		}
+//		fmt.Println(path)
+//		return nil
+//	})
 func (d *DataNode) Walk(root string, fn fs.WalkDirFunc, opts ...WalkOptions) error {
 	var maxDepth int
 	var filter func(string, fs.DirEntry) bool
@@ -270,7 +379,15 @@ func (d *DataNode) Walk(root string, fn fs.WalkDirFunc, opts ...WalkOptions) err
 	})
 }
 
-// CopyFile copies a file from the DataNode to the local filesystem.
+// CopyFile copies a file from the DataNode to a specified path on the local
+// filesystem.
+//
+// Example:
+//
+//	err := dn.CopyFile("my-file.txt", "/tmp/my-file.txt", 0644)
+//	if err != nil {
+//		// handle error
+//	}
 func (d *DataNode) CopyFile(sourcePath string, target string, perm os.FileMode) error {
 	sourceFile, err := d.Open(sourcePath)
 	if err != nil {
diff --git a/pkg/github/github.go b/pkg/github/github.go
index 2e2e832..e6a27e7 100644
--- a/pkg/github/github.go
+++ b/pkg/github/github.go
@@ -1,3 +1,4 @@
+// Package github provides a client for interacting with the GitHub API.
 package github
 
 import (
@@ -11,23 +12,40 @@ import (
 	"golang.org/x/oauth2"
 )
 
+// Repo represents a GitHub repository, containing the information needed to
+// clone it.
 type Repo struct {
+	// CloneURL is the URL used to clone the repository.
 	CloneURL string `json:"clone_url"`
 }
 
-// GithubClient is an interface for interacting with the Github API.
+// GithubClient defines the interface for interacting with the GitHub API. This
+// allows for mocking the client in tests.
 type GithubClient interface {
+	// GetPublicRepos retrieves a list of all public repository clone URLs for a
+	// given user or organization.
 	GetPublicRepos(ctx context.Context, userOrOrg string) ([]string, error)
 }
 
-// NewGithubClient creates a new GithubClient.
+// NewGithubClient creates and returns a new GithubClient.
+//
+// Example:
+//
+//	client := github.NewGithubClient()
+//	repos, err := client.GetPublicRepos(context.Background(), "my-org")
+//	if err != nil {
+//		// handle error
+//	}
 func NewGithubClient() GithubClient {
 	return &githubClient{}
 }
 
 type githubClient struct{}
 
-// NewAuthenticatedClient creates a new authenticated http client.
+// NewAuthenticatedClient creates a new http.Client that authenticates with the
+// GitHub API using a token from the GITHUB_TOKEN environment variable. If the
+// variable is not set, it returns the default http.Client. This variable can
+// be overridden in tests to provide a mock client.
 var NewAuthenticatedClient = func(ctx context.Context) *http.Client {
 	token := os.Getenv("GITHUB_TOKEN")
 	if token == "" {
diff --git a/pkg/github/release.go b/pkg/github/release.go
index 4aaa1ef..3a400f8 100644
--- a/pkg/github/release.go
+++ b/pkg/github/release.go
@@ -12,20 +12,31 @@ import (
 )
 
 var (
-	// NewClient is a variable that holds the function to create a new GitHub client.
-	// This allows for mocking in tests.
+	// NewClient is a function that creates a new GitHub client. It is a
+	// variable to allow for mocking in tests.
 	NewClient = func(httpClient *http.Client) *github.Client {
 		return github.NewClient(httpClient)
 	}
-	// NewRequest is a variable that holds the function to create a new HTTP request.
+	// NewRequest is a function that creates a new HTTP request. It is a
+	// variable to allow for mocking in tests.
 	NewRequest = func(method, url string, body io.Reader) (*http.Request, error) {
 		return http.NewRequest(method, url, body)
 	}
-	// DefaultClient is the default http client
+	// DefaultClient is the default http client used for making requests. It is
+	// a variable to allow for mocking in tests.
 	DefaultClient = &http.Client{}
 )
 
-// GetLatestRelease gets the latest release for a repository.
+// GetLatestRelease fetches the latest release metadata for a given GitHub
+// repository.
+//
+// Example:
+//
+//	release, err := github.GetLatestRelease("my-org", "my-repo")
+//	if err != nil {
+//		// handle error
+//	}
+//	fmt.Println(release.GetTagName())
 func GetLatestRelease(owner, repo string) (*github.RepositoryRelease, error) {
 	client := NewClient(nil)
 	release, _, err := client.Repositories.GetLatestRelease(context.Background(), owner, repo)
@@ -35,7 +46,20 @@ func GetLatestRelease(owner, repo string) (*github.RepositoryRelease, error) {
 	return release, nil
 }
 
-// DownloadReleaseAsset downloads a release asset.
+// DownloadReleaseAsset downloads the content of a release asset.
+//
+// Example:
+//
+//	// Assuming 'release' is a *github.RepositoryRelease
+//	for _, asset := range release.Assets {
+//		if asset.GetName() == "my-asset.zip" {
+//			data, err := github.DownloadReleaseAsset(asset)
+//			if err != nil {
+//				// handle error
+//			}
+//			// do something with data
+//		}
+//	}
 func DownloadReleaseAsset(asset *github.ReleaseAsset) ([]byte, error) {
 	req, err := NewRequest("GET", asset.GetBrowserDownloadURL(), nil)
 	if err != nil {
@@ -61,7 +85,16 @@ func DownloadReleaseAsset(asset *github.ReleaseAsset) ([]byte, error) {
 	return buf.Bytes(), nil
 }
 
-// ParseRepoFromURL parses the owner and repository from a GitHub URL.
+// ParseRepoFromURL extracts the owner and repository name from a variety of
+// GitHub URL formats, including HTTPS, Git, and SCP-style URLs.
+//
+// Example:
+//
+//	owner, repo, err := github.ParseRepoFromURL("https://github.com/my-org/my-repo.git")
+//	if err != nil {
+//		// handle error
+//	}
+//	fmt.Println(owner, repo) // "my-org", "my-repo"
 func ParseRepoFromURL(u string) (owner, repo string, err error) {
 	u = strings.TrimSuffix(u, ".git")
 
diff --git a/pkg/logger/logger.go b/pkg/logger/logger.go
index 0dfc2d2..4ef7789 100644
--- a/pkg/logger/logger.go
+++ b/pkg/logger/logger.go
@@ -1,3 +1,4 @@
+// Package logger provides a simple configurable logger for the application.
 package logger
 
 import (
@@ -5,6 +6,19 @@ import (
 	"os"
 )
 
+// New creates a new slog.Logger. If verbose is true, the logger will be
+// configured to show debug messages. Otherwise, it will only show info
+// level and above.
+//
+// Example:
+//
+//	// Create a standard logger
+//	log := logger.New(false)
+//	log.Info("This is an info message")
+//
+//	// Create a verbose logger
+//	verboseLog := logger.New(true)
+//	verboseLog.Debug("This is a debug message")
 func New(verbose bool) *slog.Logger {
 	level := slog.LevelInfo
 	if verbose {
diff --git a/pkg/mocks/http.go b/pkg/mocks/http.go
index f47fe67..3c70e3c 100644
--- a/pkg/mocks/http.go
+++ b/pkg/mocks/http.go
@@ -1,3 +1,4 @@
+// Package mocks provides mock implementations of interfaces for testing purposes.
 package mocks
 
 import (
@@ -7,20 +8,28 @@ import (
 	"sync"
 )
 
-// MockRoundTripper is a mock implementation of http.RoundTripper.
+// MockRoundTripper is a mock implementation of the http.RoundTripper interface,
+// used for mocking HTTP clients in tests. It allows setting predefined responses
+// for specific URLs.
 type MockRoundTripper struct {
 	mu        sync.RWMutex
 	responses map[string]*http.Response
 }
 
-// SetResponses sets the mock responses in a thread-safe way.
+// SetResponses sets the mock responses for the MockRoundTripper in a thread-safe
+// manner. The responses map keys are URLs and values are the http.Response
+// objects to be returned for those URLs.
 func (m *MockRoundTripper) SetResponses(responses map[string]*http.Response) {
 	m.mu.Lock()
 	defer m.mu.Unlock()
 	m.responses = responses
 }
 
-// RoundTrip implements the http.RoundTripper interface.
+// RoundTrip is the implementation of the http.RoundTripper interface. It looks
+// up the request URL in the mock responses map and returns the corresponding
+// response. If no response is found, it returns a 404 Not Found response.
+// It performs a deep copy of the response to prevent race conditions on the
+// response body.
 func (m *MockRoundTripper) RoundTrip(req *http.Request) (*http.Response, error) {
 	url := req.URL.String()
 	m.mu.RLock()
@@ -64,7 +73,21 @@ func (m *MockRoundTripper) RoundTrip(req *http.Request) (*http.Response, error)
 	}, nil
 }
 
-// NewMockClient creates a new http.Client with a MockRoundTripper.
+// NewMockClient creates a new http.Client that uses the MockRoundTripper. This
+// is a convenience function for creating a mock HTTP client for tests. The
+// responses map is defensively copied to prevent race conditions.
+//
+// Example:
+//
+//	mockResponses := map[string]*http.Response{
+//		"https://example.com": {
+//			StatusCode: http.StatusOK,
+//			Body:       io.NopCloser(bytes.NewBufferString("Hello")),
+//		},
+//	}
+//	client := mocks.NewMockClient(mockResponses)
+//	resp, err := client.Get("https://example.com")
+//	// ...
 func NewMockClient(responses map[string]*http.Response) *http.Client {
 	responsesCopy := make(map[string]*http.Response)
 	if responses != nil {
diff --git a/pkg/mocks/mock_vcs.go b/pkg/mocks/mock_vcs.go
index 6c0890d..a393cf0 100644
--- a/pkg/mocks/mock_vcs.go
+++ b/pkg/mocks/mock_vcs.go
@@ -7,13 +7,26 @@ import (
 	"github.com/Snider/Borg/pkg/vcs"
 )
 
-// MockGitCloner is a mock implementation of the GitCloner interface.
+// MockGitCloner is a mock implementation of the vcs.GitCloner interface, used
+// for testing code that clones Git repositories. It allows setting a predefined
+// DataNode and an error to be returned.
 type MockGitCloner struct {
-	DN  *datanode.DataNode
+	// DN is the DataNode to be returned by CloneGitRepository.
+	DN *datanode.DataNode
+	// Err is the error to be returned by CloneGitRepository.
 	Err error
 }
 
-// NewMockGitCloner creates a new MockGitCloner.
+// NewMockGitCloner creates a new MockGitCloner with the given DataNode and
+// error. This is a convenience function for creating a mock Git cloner for
+// tests.
+//
+// Example:
+//
+//	mockDN := datanode.New()
+//	mockDN.AddData("file.txt", []byte("hello"))
+//	mockCloner := mocks.NewMockGitCloner(mockDN, nil)
+//	// use mockCloner in tests
 func NewMockGitCloner(dn *datanode.DataNode, err error) vcs.GitCloner {
 	return &MockGitCloner{
 		DN:  dn,
@@ -21,7 +34,8 @@ func NewMockGitCloner(dn *datanode.DataNode, err error) vcs.GitCloner {
 	}
 }
 
-// CloneGitRepository mocks the cloning of a Git repository.
+// CloneGitRepository is the mock implementation of the vcs.GitCloner interface.
+// It returns the pre-configured DataNode and error.
 func (m *MockGitCloner) CloneGitRepository(repoURL string, progress io.Writer) (*datanode.DataNode, error) {
 	return m.DN, m.Err
 }
diff --git a/pkg/pwa/pwa.go b/pkg/pwa/pwa.go
index 3272035..beda6cf 100644
--- a/pkg/pwa/pwa.go
+++ b/pkg/pwa/pwa.go
@@ -1,3 +1,5 @@
+// Package pwa provides functionality for discovering and downloading Progressive
+// Web Application (PWA) assets.
 package pwa
 
 import (
@@ -14,13 +16,26 @@ import (
 	"golang.org/x/net/html"
 )
 
-// PWAClient is an interface for interacting with PWAs.
+// PWAClient defines the interface for interacting with Progressive Web Apps.
+// This allows for mocking the client in tests.
 type PWAClient interface {
+	// FindManifest discovers the web app manifest URL for a given PWA URL.
 	FindManifest(pwaURL string) (string, error)
+	// DownloadAndPackagePWA downloads all the assets of a PWA, including the
+	// manifest, start URL, and icons, and packages them into a DataNode.
 	DownloadAndPackagePWA(pwaURL, manifestURL string, bar *progressbar.ProgressBar) (*datanode.DataNode, error)
 }
 
-// NewPWAClient creates a new PWAClient.
+// NewPWAClient creates and returns a new PWAClient that uses a default
+// http.Client.
+//
+// Example:
+//
+//	client := pwa.NewPWAClient()
+//	manifestURL, err := client.FindManifest("https://example.com")
+//	if err != nil {
+//		// handle error
+//	}
 func NewPWAClient() PWAClient {
 	return &pwaClient{client: http.DefaultClient}
 }
@@ -29,7 +44,8 @@ type pwaClient struct {
 	client *http.Client
 }
 
-// FindManifest finds the manifest for a PWA.
+// FindManifest discovers the web app manifest URL for a given PWA URL. It does
+// this by fetching the PWA's HTML and looking for a <link rel="manifest"> tag.
 func (p *pwaClient) FindManifest(pwaURL string) (string, error) {
 	resp, err := p.client.Get(pwaURL)
 	if err != nil {
@@ -83,7 +99,9 @@ func (p *pwaClient) FindManifest(pwaURL string) (string, error) {
 	return resolvedURL.String(), nil
 }
 
-// DownloadAndPackagePWA downloads and packages a PWA into a DataNode.
+// DownloadAndPackagePWA downloads all the assets of a PWA, including the
+// manifest, start URL, and icons, and packages them into a DataNode. It
+// downloads the assets concurrently for performance.
 func (p *pwaClient) DownloadAndPackagePWA(pwaURL, manifestURL string, bar *progressbar.ProgressBar) (*datanode.DataNode, error) {
 	dn := datanode.New()
 	var wg sync.WaitGroup
@@ -206,14 +224,28 @@ func (p *pwaClient) resolveURL(base, ref string) (*url.URL, error) {
 	return baseURL.ResolveReference(refURL), nil
 }
 
-// MockPWAClient is a mock implementation of the PWAClient interface.
+// MockPWAClient is a mock implementation of the PWAClient interface, used for
+// testing. It allows setting a predefined manifest URL, DataNode, and error to
+// be returned by its methods.
 type MockPWAClient struct {
+	// ManifestURL is the manifest URL to be returned by FindManifest.
 	ManifestURL string
-	DN          *datanode.DataNode
-	Err         error
+	// DN is the DataNode to be returned by DownloadAndPackagePWA.
+	DN *datanode.DataNode
+	// Err is the error to be returned by the mock methods.
+	Err error
 }
 
-// NewMockPWAClient creates a new MockPWAClient.
+// NewMockPWAClient creates a new MockPWAClient with the given manifest URL,
+// DataNode, and error. This is a convenience function for creating a mock PWA
+// client for tests.
+//
+// Example:
+//
+//	mockDN := datanode.New()
+//	mockDN.AddData("manifest.json", []byte("{}"))
+//	mockClient := pwa.NewMockPWAClient("https://example.com/manifest.json", mockDN, nil)
+//	// use mockClient in tests
 func NewMockPWAClient(manifestURL string, dn *datanode.DataNode, err error) PWAClient {
 	return &MockPWAClient{
 		ManifestURL: manifestURL,
@@ -222,12 +254,14 @@ func NewMockPWAClient(manifestURL string, dn *datanode.DataNode, err error) PWAC
 	}
 }
 
-// FindManifest mocks the finding of a PWA manifest.
+// FindManifest is the mock implementation of the PWAClient interface. It
+// returns the pre-configured manifest URL and error.
 func (m *MockPWAClient) FindManifest(pwaURL string) (string, error) {
 	return m.ManifestURL, m.Err
 }
 
-// DownloadAndPackagePWA mocks the downloading and packaging of a PWA.
+// DownloadAndPackagePWA is the mock implementation of the PWAClient interface.
+// It returns the pre-configured DataNode and error.
 func (m *MockPWAClient) DownloadAndPackagePWA(pwaURL, manifestURL string, bar *progressbar.ProgressBar) (*datanode.DataNode, error) {
 	return m.DN, m.Err
 }
diff --git a/pkg/tarfs/tarfs.go b/pkg/tarfs/tarfs.go
index 6abbee4..143ebb0 100644
--- a/pkg/tarfs/tarfs.go
+++ b/pkg/tarfs/tarfs.go
@@ -1,3 +1,6 @@
+// Package tarfs provides an http.FileSystem implementation that serves files
+// from a tar archive. This is particularly useful for serving the contents of a
+// .tim file's rootfs directly without unpacking it to disk.
 package tarfs
 
 import (
@@ -11,12 +14,28 @@ import (
 	"time"
 )
 
-// TarFS is a http.FileSystem that serves files from a tar archive.
+// TarFS is an implementation of http.FileSystem that serves files from an
+// in-memory tar archive. It specifically looks for files within a "rootfs/"
+// directory in the archive, which is the convention used by .tim files.
 type TarFS struct {
 	files map[string]*tarFile
 }
 
-// New creates a new TarFS from a tar archive.
+// New creates a new TarFS from a byte slice containing a tar archive. It
+// parses the archive and stores the files from the "rootfs/" directory in
+// memory.
+//
+// Example:
+//
+//	tarData, err := os.ReadFile("my-archive.tar")
+//	if err != nil {
+//		// handle error
+//	}
+//	fs, err := tarfs.New(tarData)
+//	if err != nil {
+//		// handle error
+//	}
+//	http.Handle("/", http.FileServer(fs))
 func New(data []byte) (*TarFS, error) {
 	fs := &TarFS{
 		files: make(map[string]*tarFile),
@@ -48,7 +67,8 @@ func New(data []byte) (*TarFS, error) {
 	return fs, nil
 }
 
-// Open opens a file from the tar archive.
+// Open opens a file from the tar archive for reading. This is the implementation
+// of the http.FileSystem interface.
 func (fs *TarFS) Open(name string) (http.File, error) {
 	name = strings.TrimPrefix(name, "/")
 	if file, ok := fs.files[name]; ok {
diff --git a/pkg/matrix/config.go b/pkg/tim/config.go
similarity index 89%
rename from pkg/matrix/config.go
rename to pkg/tim/config.go
index 6ed7aa7..a491fc9 100644
--- a/pkg/matrix/config.go
+++ b/pkg/tim/config.go
@@ -1,10 +1,11 @@
-package matrix
+package tim
 
 import (
 	"encoding/json"
 )
 
-// This is the default runc spec, generated by `runc spec`.
+// DefaultConfigJSON is the default runc spec in JSON format, generated by
+// `runc spec`. This is used as the base configuration for a new TIM.
 const DefaultConfigJSON = `{
 	"ociVersion": "1.2.1",
 	"process": {
@@ -179,7 +180,8 @@ const DefaultConfigJSON = `{
 	}
 }`
 
-// defaultConfig returns the default runc spec.
+// defaultConfigVar is a function variable that unmarshals the default runc spec
+// from DefaultConfigJSON. It is a variable to allow for mocking in tests.
 var defaultConfigVar = func() (map[string]interface{}, error) {
 	var spec map[string]interface{}
 	err := json.Unmarshal([]byte(DefaultConfigJSON), &spec)
diff --git a/pkg/matrix/run.go b/pkg/tim/run.go
similarity index 62%
rename from pkg/matrix/run.go
rename to pkg/tim/run.go
index 1d1d1f8..776a5ad 100644
--- a/pkg/matrix/run.go
+++ b/pkg/tim/run.go
@@ -1,4 +1,4 @@
-package matrix
+package tim
 
 import (
 	"archive/tar"
@@ -8,20 +8,25 @@ import (
 	"path/filepath"
 )
 
-// ExecCommand is a wrapper around exec.Command that can be overridden for testing.
+// ExecCommand is a function variable that creates a new exec.Cmd. It is a
+// variable to allow for mocking in tests.
 var ExecCommand = exec.Command
 
-// Run executes a Terminal Isolation Matrix from a given path.
-func Run(matrixPath string) error {
-	// Create a temporary directory to unpack the matrix file.
+// Run unpacks and executes a TIM from a given tarball path
+// using runc. It unpacks the bundle into a temporary directory, then executes it
+// with "runc run".
+//
+// Note: This function requires "runc" to be installed and in the system's PATH.
+func Run(timPath string) error {
+	// Create a temporary directory to unpack the TIM file.
 	tempDir, err := os.MkdirTemp("", "borg-run-*")
 	if err != nil {
 		return err
 	}
 	defer os.RemoveAll(tempDir)
 
-	// Unpack the matrix file.
-	file, err := os.Open(matrixPath)
+	// Unpack the TIM file.
+	file, err := os.Open(timPath)
 	if err != nil {
 		return err
 	}
@@ -55,7 +60,7 @@ func Run(matrixPath string) error {
 		}
 	}
 
-	// Run the matrix.
+	// Run the TIM.
 	runc := ExecCommand("runc", "run", "borg-container")
 	runc.Dir = tempDir
 	runc.Stdout = os.Stdout
diff --git a/pkg/matrix/run_test.go b/pkg/tim/run_test.go
similarity index 98%
rename from pkg/matrix/run_test.go
rename to pkg/tim/run_test.go
index c76a03c..49feedb 100644
--- a/pkg/matrix/run_test.go
+++ b/pkg/tim/run_test.go
@@ -1,4 +1,4 @@
-package matrix
+package tim
 
 import (
 	"fmt"
diff --git a/pkg/matrix/matrix.go b/pkg/tim/tim.go
similarity index 56%
rename from pkg/matrix/matrix.go
rename to pkg/tim/tim.go
index a890974..531b2d2 100644
--- a/pkg/matrix/matrix.go
+++ b/pkg/tim/tim.go
@@ -1,4 +1,7 @@
-package matrix
+// Package tim provides types and functions for creating and manipulating
+// Terminal Isolation Matrix (.tim) files, which are runc-compatible container
+// bundles.
+package tim
 
 import (
 	"archive/tar"
@@ -11,18 +14,32 @@ import (
 )
 
 var (
+	// ErrDataNodeRequired is returned when a DataNode is required but not provided.
 	ErrDataNodeRequired = errors.New("datanode is required")
-	ErrConfigIsNil      = errors.New("config is nil")
+	// ErrConfigIsNil is returned when the config is nil.
+	ErrConfigIsNil = errors.New("config is nil")
 )
 
-// TerminalIsolationMatrix represents a runc bundle.
-type TerminalIsolationMatrix struct {
+// TIM represents a runc-compatible container bundle. It consists of a runc
+// configuration file (config.json) and a root filesystem (rootfs).
+type TIM struct {
+	// Config is the JSON representation of the runc configuration.
 	Config []byte
+	// RootFS is an in-memory filesystem representing the container's root.
 	RootFS *datanode.DataNode
 }
 
-// New creates a new, empty TerminalIsolationMatrix.
-func New() (*TerminalIsolationMatrix, error) {
+// New creates a new, empty TIM with a default runc
+// configuration.
+//
+// Example:
+//
+//	m, err := tim.New()
+//	if err != nil {
+//		// handle error
+//	}
+//	m.RootFS.AddData("hello.txt", []byte("hello world"))
+func New() (*TIM, error) {
 	// Use the default runc spec as a starting point.
 	// This can be customized later.
 	spec, err := defaultConfigVar()
@@ -35,14 +52,24 @@ func New() (*TerminalIsolationMatrix, error) {
 		return nil, err
 	}
 
-	return &TerminalIsolationMatrix{
+	return &TIM{
 		Config: specBytes,
 		RootFS: datanode.New(),
 	}, nil
 }
 
-// FromDataNode creates a new TerminalIsolationMatrix from a DataNode.
-func FromDataNode(dn *datanode.DataNode) (*TerminalIsolationMatrix, error) {
+// FromDataNode creates a new TIM using the provided DataNode
+// as the root filesystem. It uses a default runc configuration.
+//
+// Example:
+//
+//	dn := datanode.New()
+//	dn.AddData("my-file.txt", []byte("hello"))
+//	m, err := tim.FromDataNode(dn)
+//	if err != nil {
+//		// handle error
+//	}
+func FromDataNode(dn *datanode.DataNode) (*TIM, error) {
 	if dn == nil {
 		return nil, ErrDataNodeRequired
 	}
@@ -54,8 +81,22 @@ func FromDataNode(dn *datanode.DataNode) (*TerminalIsolationMatrix, error) {
 	return m, nil
 }
 
-// ToTar serializes the TerminalIsolationMatrix to a tarball.
-func (m *TerminalIsolationMatrix) ToTar() ([]byte, error) {
+// ToTar serializes the TIM into a tar archive. The resulting
+// tarball will contain a config.json file and a rootfs directory, making it
+// compatible with runc.
+//
+// Example:
+//
+//	// Assuming 'm' is a *tim.TIM
+//	tarData, err := m.ToTar()
+//	if err != nil {
+//		// handle error
+//	}
+//	err = os.WriteFile("my-bundle.tar", tarData, 0644)
+//	if err != nil {
+//		// handle error
+//	}
+func (m *TIM) ToTar() ([]byte, error) {
 	if m.Config == nil {
 		return nil, ErrConfigIsNil
 	}
diff --git a/pkg/matrix/matrix_more_test.go b/pkg/tim/tim_more_test.go
similarity index 98%
rename from pkg/matrix/matrix_more_test.go
rename to pkg/tim/tim_more_test.go
index a8100ff..e23661e 100644
--- a/pkg/matrix/matrix_more_test.go
+++ b/pkg/tim/tim_more_test.go
@@ -1,4 +1,4 @@
-package matrix
+package tim
 
 import (
 	"errors"
diff --git a/pkg/matrix/matrix_test.go b/pkg/tim/tim_test.go
similarity index 99%
rename from pkg/matrix/matrix_test.go
rename to pkg/tim/tim_test.go
index bd4c917..1221579 100644
--- a/pkg/matrix/matrix_test.go
+++ b/pkg/tim/tim_test.go
@@ -1,4 +1,4 @@
-package matrix
+package tim
 
 import (
 	"archive/tar"
diff --git a/pkg/ui/data.go b/pkg/ui/data.go
index 4c6937e..e6fa12d 100644
--- a/pkg/ui/data.go
+++ b/pkg/ui/data.go
@@ -2,5 +2,8 @@ package ui
 
 import "embed"
 
+// QuotesJSON is an embedded filesystem containing the quotes.json file.
+// This allows the quotes to be bundled directly into the application binary.
+//
 //go:embed quotes.json
 var QuotesJSON embed.FS
diff --git a/pkg/ui/non_interactive_prompter.go b/pkg/ui/non_interactive_prompter.go
index 8144a72..e818de9 100644
--- a/pkg/ui/non_interactive_prompter.go
+++ b/pkg/ui/non_interactive_prompter.go
@@ -1,3 +1,5 @@
+// Package ui provides components for creating command-line user interfaces,
+// including progress bars and non-interactive prompters.
 package ui
 
 import (
@@ -10,6 +12,10 @@ import (
 	"github.com/mattn/go-isatty"
 )
 
+// NonInteractivePrompter is used to display thematic quotes during long-running
+// operations in non-interactive sessions (e.g., in a CI/CD pipeline). It can be
+// started and stopped, and it will periodically print a quote from the provided
+// quote function.
 type NonInteractivePrompter struct {
 	stopChan  chan struct{}
 	quoteFunc func() (string, error)
@@ -18,6 +24,15 @@ type NonInteractivePrompter struct {
 	stopOnce  sync.Once
 }
 
+// NewNonInteractivePrompter creates a new NonInteractivePrompter with the given
+// quote function.
+//
+// Example:
+//
+//	prompter := ui.NewNonInteractivePrompter(ui.GetVCSQuote)
+//	prompter.Start()
+//	// ... long-running operation ...
+//	prompter.Stop()
 func NewNonInteractivePrompter(quoteFunc func() (string, error)) *NonInteractivePrompter {
 	return &NonInteractivePrompter{
 		stopChan:  make(chan struct{}),
@@ -25,6 +40,8 @@ func NewNonInteractivePrompter(quoteFunc func() (string, error)) *NonInteractive
 	}
 }
 
+// Start begins the prompter, which will periodically print quotes to the console
+// in non-interactive sessions. It is safe to call Start multiple times.
 func (p *NonInteractivePrompter) Start() {
 	p.mu.Lock()
 	if p.started {
@@ -59,6 +76,7 @@ func (p *NonInteractivePrompter) Start() {
 	}()
 }
 
+// Stop halts the prompter. It is safe to call Stop multiple times.
 func (p *NonInteractivePrompter) Stop() {
 	if p.IsInteractive() {
 		return
@@ -68,6 +86,8 @@ func (p *NonInteractivePrompter) Stop() {
 	})
 }
 
+// IsInteractive checks if the current session is interactive (i.e., running in
+// a terminal).
 func (p *NonInteractivePrompter) IsInteractive() bool {
 	return isatty.IsTerminal(os.Stdout.Fd()) || isatty.IsCygwinTerminal(os.Stdout.Fd())
 }
diff --git a/pkg/ui/progress_writer.go b/pkg/ui/progress_writer.go
index b46b51b..8061a00 100644
--- a/pkg/ui/progress_writer.go
+++ b/pkg/ui/progress_writer.go
@@ -3,14 +3,21 @@ package ui
 
 import "github.com/schollz/progressbar/v3"
 
+// progressWriter is an io.Writer that updates a progress bar's description
+// with the written data. This is useful for showing the progress of operations
+// that produce streaming text output, like git cloning.
 type progressWriter struct {
 	bar *progressbar.ProgressBar
 }
 
+// NewProgressWriter creates a new progressWriter that wraps the given
+// progress bar.
 func NewProgressWriter(bar *progressbar.ProgressBar) *progressWriter {
 	return &progressWriter{bar: bar}
 }
 
+// Write implements the io.Writer interface. It updates the progress bar's
+// description with the contents of the byte slice.
 func (pw *progressWriter) Write(p []byte) (n int, err error) {
 	if pw == nil || pw.bar == nil {
 		return len(p), nil
diff --git a/pkg/ui/progressbar.go b/pkg/ui/progressbar.go
index 8f143e1..15a8a7d 100644
--- a/pkg/ui/progressbar.go
+++ b/pkg/ui/progressbar.go
@@ -4,7 +4,16 @@ import (
 	"github.com/schollz/progressbar/v3"
 )
 
-// NewProgressBar creates a new progress bar with the specified total and description.
+// NewProgressBar creates and returns a new progress bar with a standard
+// set of options suitable for the application.
+//
+// Example:
+//
+//	bar := ui.NewProgressBar(100, "Downloading files")
+//	for i := 0; i < 100; i++ {
+//		bar.Add(1)
+//		time.Sleep(10 * time.Millisecond)
+//	}
 func NewProgressBar(total int, description string) *progressbar.ProgressBar {
 	return progressbar.NewOptions(total,
 		progressbar.OptionSetDescription(description),
diff --git a/pkg/ui/quote.go b/pkg/ui/quote.go
index 166cf91..540777b 100644
--- a/pkg/ui/quote.go
+++ b/pkg/ui/quote.go
@@ -20,6 +20,7 @@ func init() {
 	rand.Seed(time.Now().UnixNano())
 }
 
+// Quotes represents the structure of the quotes.json file.
 type Quotes struct {
 	InitWorkAssimilate        []string `json:"init_work_assimilate"`
 	EncryptionServiceMessages []string `json:"encryption_service_messages"`
@@ -61,6 +62,8 @@ func getQuotes() (*Quotes, error) {
 	return cachedQuotes, quotesErr
 }
 
+// GetRandomQuote selects and returns a random quote from all available quote
+// categories.
 func GetRandomQuote() (string, error) {
 	quotes, err := getQuotes()
 	if err != nil {
@@ -82,6 +85,7 @@ func GetRandomQuote() (string, error) {
 	return allQuotes[rand.Intn(len(allQuotes))], nil
 }
 
+// PrintQuote retrieves a random quote and prints it to the console in green.
 func PrintQuote() {
 	quote, err := GetRandomQuote()
 	if err != nil {
@@ -92,6 +96,7 @@ func PrintQuote() {
 	c.Println(quote)
 }
 
+// GetVCSQuote returns a random quote specifically from the VCS processing category.
 func GetVCSQuote() (string, error) {
 	quotes, err := getQuotes()
 	if err != nil {
@@ -103,6 +108,7 @@ func GetVCSQuote() (string, error) {
 	return quotes.VCSProcessing[rand.Intn(len(quotes.VCSProcessing))], nil
 }
 
+// GetPWAQuote returns a random quote specifically from the PWA processing category.
 func GetPWAQuote() (string, error) {
 	quotes, err := getQuotes()
 	if err != nil {
@@ -114,6 +120,8 @@ func GetPWAQuote() (string, error) {
 	return quotes.PWAProcessing[rand.Intn(len(quotes.PWAProcessing))], nil
 }
 
+// GetWebsiteQuote returns a random quote specifically from the "code related long"
+// category, which is used for website processing.
 func GetWebsiteQuote() (string, error) {
 	quotes, err := getQuotes()
 	if err != nil {
diff --git a/pkg/vcs/git.go b/pkg/vcs/git.go
index 92e20aa..0c0aa44 100644
--- a/pkg/vcs/git.go
+++ b/pkg/vcs/git.go
@@ -1,3 +1,5 @@
+// Package vcs provides functionality for interacting with version control
+// systems, such as Git.
 package vcs
 
 import (
@@ -10,19 +12,33 @@ import (
 	"github.com/go-git/go-git/v5"
 )
 
-// GitCloner is an interface for cloning Git repositories.
+// GitCloner defines the interface for cloning Git repositories. This allows for
+// mocking the cloner in tests.
 type GitCloner interface {
+	// CloneGitRepository clones a Git repository from a URL and packages its
+	// contents into a DataNode.
 	CloneGitRepository(repoURL string, progress io.Writer) (*datanode.DataNode, error)
 }
 
-// NewGitCloner creates a new GitCloner.
+// NewGitCloner creates and returns a new GitCloner.
+//
+// Example:
+//
+//	cloner := vcs.NewGitCloner()
+//	dn, err := cloner.CloneGitRepository("https://github.com/example/repo.git", nil)
+//	if err != nil {
+//		// handle error
+//	}
 func NewGitCloner() GitCloner {
 	return &gitCloner{}
 }
 
 type gitCloner struct{}
 
-// CloneGitRepository clones a Git repository from a URL and packages it into a DataNode.
+// CloneGitRepository clones a Git repository from a URL into a temporary
+// directory, then packages the contents of the repository into a DataNode.
+// The .git directory is excluded from the DataNode. If the repository is empty,
+// an empty DataNode is returned.
 func (g *gitCloner) CloneGitRepository(repoURL string, progress io.Writer) (*datanode.DataNode, error) {
 	tempPath, err := os.MkdirTemp("", "borg-clone-*")
 	if err != nil {
diff --git a/pkg/website/website.go b/pkg/website/website.go
index b2bd517..2324b82 100644
--- a/pkg/website/website.go
+++ b/pkg/website/website.go
@@ -1,3 +1,5 @@
+// Package website provides functionality for recursively downloading a website's
+// assets and packaging them into a DataNode.
 package website
 
 import (
@@ -13,9 +15,13 @@ import (
 	"golang.org/x/net/html"
 )
 
+// DownloadAndPackageWebsite is a function variable that can be overridden for
+// testing. It defaults to the internal downloadAndPackageWebsite function.
 var DownloadAndPackageWebsite = downloadAndPackageWebsite
 
-// Downloader is a recursive website downloader.
+// Downloader is a recursive website downloader that stores the downloaded files
+// in a DataNode. It keeps track of visited URLs to avoid infinite loops and
+// respects a maximum crawl depth.
 type Downloader struct {
 	baseURL     *url.URL
 	dn          *datanode.DataNode
@@ -26,12 +32,19 @@ type Downloader struct {
 	errors      []error
 }
 
-// NewDownloader creates a new Downloader.
+// NewDownloader creates a new Downloader with a default http.Client.
+//
+// Example:
+//
+//	downloader := website.NewDownloader(2)
+//	// The downloader can be further configured before starting the crawl.
 func NewDownloader(maxDepth int) *Downloader {
 	return NewDownloaderWithClient(maxDepth, http.DefaultClient)
 }
 
 // NewDownloaderWithClient creates a new Downloader with a custom http.Client.
+// This is useful for testing or for configuring a client with specific
+// transport settings.
 func NewDownloaderWithClient(maxDepth int, client *http.Client) *Downloader {
 	return &Downloader{
 		dn:          datanode.New(),