Commit graph

13 commits

Author SHA1 Message Date
Snider
abdb479b5f chore(io): Fix merge conflicts and address PR feedback
- Resolved merge conflicts with latest dev branch.
- Restored Medium abstraction in pkg/cli/daemon.go and context checks in pkg/container/linuxkit.go.
- Refactored pkg/repos/registry.go to be truly medium-agnostic (removed filepath.Abs).
- Updated pkg/cli/daemon_test.go to use MockMedium.
- Verified all builds and tests pass locally.
2026-02-04 15:22:55 +00:00
Snider
9901de2350 chore(io): Final fixes for repos Medium migration
- Fixed formatting issue in internal/cmd/setup/cmd_github.go by using 'coreio' alias for consistency.
- Ensured all callers use the 'coreio' alias when referring to the io package.
- Verified project-wide build completes successfully.
2026-02-04 14:38:39 +00:00
Snider
8553ba2a1c chore(io): Fix undefined io errors in repos migration
- Fixed "undefined: io" compilation errors by using the correct 'coreio' alias in internal commands.
- Corrected FindRegistry and LoadRegistry calls in cmd_file_sync.go, cmd_install.go, and cmd_search.go.
- Verified fix with successful project-wide build.
2026-02-04 14:31:24 +00:00
Snider
cac1b38cce chore(io): Migrate pkg/repos to Medium abstraction
- Modified Registry and Repo structs in pkg/repos/registry.go to include io.Medium.
- Updated LoadRegistry, FindRegistry, and ScanDirectory signatures to accept io.Medium.
- Migrated all internal file operations in pkg/repos/registry.go to use the Medium interface instead of io.Local or os package.
- Updated dozens of call sites across internal/cmd/ to pass io.Local to the updated repos functions.
- Ensured consistent use of io.Medium for repo existence and git checks.
2026-02-04 14:27:06 +00:00
Snider
18f68ef907 refactor(core): decompose Core into serviceManager + messageBus (#282)
* refactor(core): decompose Core into serviceManager + messageBus (#215)

Extract two focused, unexported components from the Core "god object":

- serviceManager: owns service registry, lifecycle tracking (startables/
  stoppables), and service lock
- messageBus: owns IPC action dispatch, query handling, and task handling

All public API methods on Core become one-line delegation wrappers.
Zero consumer changes — no files outside pkg/framework/core/ modified.

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* fix(core): remove unused fields from test struct

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* fix(core): address review feedback from Gemini and Copilot

- Move locked check inside mutex in registerService to fix TOCTOU race
- Add mutex guards to enableLock and applyLock methods
- Replace fmt.Errorf with errors.Join in action() for correct error
  aggregation (consistent with queryAll and lifecycle methods)
- Add TestMessageBus_Action_Bad for error aggregation coverage

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* ci(workflows): bump host-uk/build from v3 to v4

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* ci(workflows): replace Wails build with Go CLI build

The build action doesn't yet support Wails v3. Comment out the GUI
build step and use host-uk/build/actions/setup/go for Go toolchain
setup with a plain `go build` for the CLI binary.

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* fix(container): check context before select in Stop to fix flaky test

Stop() now checks ctx.Err() before entering the select block. When a
pre-cancelled context is passed, the select could non-deterministically
choose <-done over <-ctx.Done() if the process had already exited,
causing TestLinuxKitManager_Stop_Good_ContextCancelled to fail on CI.

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* fix(ci): trim CodeQL matrix to valid languages

Remove javascript-typescript and actions from CodeQL matrix — this
repo contains only Go and Python. Invalid languages blocked SARIF
upload and prevented merge.

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* feat(go): add `core go fuzz` command and wire into QA

- New `core go fuzz` command discovers Fuzz* targets and runs them
  with configurable --duration (default 10s per target)
- Fuzz added to default QA checks with 5s burst duration
- Seed fuzz targets for core package: FuzzE (error constructor),
  FuzzServiceRegistration, FuzzMessageDispatch

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* ci(codeql): add workflow_dispatch trigger for manual runs

Allows manual triggering of CodeQL when the automatic pull_request
trigger doesn't fire.

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* ci(codeql): remove workflow in favour of default setup

CodeQL default setup is now enabled via repo settings for go and
python. The workflow-based approach uploaded results as "code quality"
rather than "code scanning", which didn't satisfy the code_scanning
ruleset requirement. Default setup handles this natively.

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* ci(workflows): add explicit permissions to all workflows

- agent-verify: add issues: write (was missing, writes comments/labels)
- ci: add contents: read (explicit least-privilege)
- coverage: add contents: read (explicit least-privilege)

All workflows now declare permissions explicitly. Repo default is
read-only, so workflows without a block silently lacked write access.

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* ci(workflows): replace inline logic with org reusable workflow callers

agent-verify.yml and auto-project.yml now delegate to centralised
reusable workflows in host-uk/.github, reducing per-repo duplication.

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.5 <noreply@anthropic.com>
2026-02-04 13:40:16 +00:00
Snider
f2bc912ebe feat: infrastructure packages and lint cleanup (#281)
* ci: consolidate duplicate workflows and merge CodeQL configs

Remove 17 duplicate workflow files that were split copies of the
combined originals. Each family (CI, CodeQL, Coverage, PR Build,
Alpha Release) had the same job duplicated across separate
push/pull_request/schedule/manual trigger files.

Merge codeql.yml and codescan.yml into a single codeql.yml with
a language matrix covering go, javascript-typescript, python,
and actions — matching the previous default setup coverage.

Remaining workflows (one per family):
- ci.yml (push + PR + manual)
- codeql.yml (push + PR + schedule, all languages)
- coverage.yml (push + PR + manual)
- alpha-release.yml (push + manual)
- pr-build.yml (PR + manual)
- release.yml (tag push)
- agent-verify.yml, auto-label.yml, auto-project.yml

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* feat: add collect, config, crypt, plugin packages and fix all lint issues

Add four new infrastructure packages with CLI commands:
- pkg/config: layered configuration (defaults → file → env → flags)
- pkg/crypt: crypto primitives (Argon2id, AES-GCM, ChaCha20, HMAC, checksums)
- pkg/plugin: plugin system with GitHub-based install/update/remove
- pkg/collect: collection subsystem (GitHub, BitcoinTalk, market, papers, excavate)

Fix all golangci-lint issues across the entire codebase (~100 errcheck,
staticcheck SA1012/SA1019/ST1005, unused, ineffassign fixes) so that
`core go qa` passes with 0 issues.

Closes #167, #168, #170, #250, #251, #252, #253, #254, #255, #256

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.5 <noreply@anthropic.com>
2026-02-04 11:34:43 +00:00
Snider
8ab25e46d6 style: fix gofmt formatting across all affected files (#279)
Adds missing trailing newlines, fixes indentation alignment, removes
extra blank lines, and corrects import ordering. Fixes CI qa format
check failures blocking all open PRs.

Files fixed:
- pkg/rag/{ingest,ollama,qdrant,query}.go (missing trailing newline)
- internal/cmd/rag/cmd_ingest.go (extra blank lines)
- internal/cmd/security/cmd_jobs.go (var alignment)
- internal/cmd/security/cmd_security.go (extra blank line)
- internal/core-ide/claude_bridge.go (indentation)
- internal/variants/core_ide.go (import ordering)
- pkg/ansible/{modules,ssh}.go (whitespace)
- pkg/build/buildcmd/cmd_release.go (var alignment)

Co-authored-by: Claude Opus 4.5 <noreply@anthropic.com>
2026-02-04 01:27:01 +00:00
Snider
5e2765fd5f feat: wire release command, add tar.xz support, unified installers (#277)
* feat(cli): wire release command and add installer scripts

- Wire up `core build release` subcommand (was orphaned)
- Wire up `core monitor` command (missing import in full variant)
- Add installer scripts for Unix (.sh) and Windows (.bat)
  - setup: Interactive with variant selection
  - ci: Minimal for CI/CD environments
  - dev: Full development variant
  - go/php/agent: Targeted development variants
- All scripts include security hardening:
  - Secure temp directories (mktemp -d)
  - Architecture validation
  - Version validation after GitHub API call
  - Proper cleanup on exit
  - PowerShell PATH updates on Windows (avoids setx truncation)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* feat(build): add tar.xz support and unified installer scripts

- Add tar.xz archive support using Borg's compress package
  - ArchiveXZ() and ArchiveWithFormat() for configurable compression
  - Better compression ratio than gzip for release artifacts
- Consolidate 12 installer scripts into 2 unified scripts
  - install.sh and install.bat with BunnyCDN edge variable support
  - Subdomains: setup.core.help, ci.core.help, dev.core.help, etc.
  - MODE and VARIANT transformed at edge based on subdomain
- Installers prefer tar.xz with automatic fallback to tar.gz
- Fixed CodeRabbit issues: HTTP status patterns, tar error handling,
  verify_install params, VARIANT validation, CI PATH persistence

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* chore: add build and release config files

- .core/build.yaml - cross-platform build configuration
- .core/release.yaml - release workflow configuration

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* chore: move plans from docs/ to tasks/

Consolidate planning documents in tasks/plans/ directory.

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* fix(install): address CodeRabbit review feedback

- Add curl timeout (--max-time) to prevent hanging on slow networks
- Rename TMPDIR to WORK_DIR to avoid clobbering system env var
- Add chmod +x to ensure binary has execute permissions
- Add error propagation after subroutine calls in batch file
- Remove System32 install attempt in CI mode (use consistent INSTALL_DIR)
- Fix HTTP status regex for HTTP/2 compatibility

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* feat(rag): add Go RAG implementation with Qdrant + Ollama

Add RAG (Retrieval Augmented Generation) tools for storing documentation
in Qdrant vector database and querying with semantic search. This replaces
the Python tools/rag implementation with a native Go solution.

New commands:
- core rag ingest [directory] - Ingest markdown files into Qdrant
- core rag query [question] - Query vector database with semantic search
- core rag collections - List and manage Qdrant collections

Features:
- Markdown chunking by sections and paragraphs with overlap
- UTF-8 safe text handling for international content
- Automatic category detection from file paths
- Multiple output formats: text, JSON, LLM context injection
- Environment variable support for host configuration

Dependencies:
- github.com/qdrant/go-client (gRPC client)
- github.com/ollama/ollama/api (embeddings API)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* feat(deploy): add pure-Go Ansible executor and Coolify API integration

Implement infrastructure deployment system with:

- pkg/ansible: Pure Go Ansible executor
  - Playbook/inventory parsing (types.go, parser.go)
  - Full execution engine with variable templating, loops, blocks,
    conditionals, handlers, and fact gathering (executor.go)
  - SSH client with key/password auth and privilege escalation (ssh.go)
  - 35+ module implementations: shell, command, copy, template, file,
    apt, service, systemd, user, group, git, docker_compose, etc. (modules.go)

- pkg/deploy/coolify: Coolify API client wrapping Python swagger client
  - List/get servers, projects, applications, databases, services
  - Generic Call() for any OpenAPI operation

- pkg/deploy/python: Embedded Python runtime for swagger client integration

- internal/cmd/deploy: CLI commands
  - core deploy servers/projects/apps/databases/services/team
  - core deploy call <operation> [params-json]

This enables Docker-free infrastructure deployment with Ansible-compatible
playbooks executed natively in Go.

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* fix(deploy): address linter warnings and build errors

- Fix fmt.Sprintf format verb error in ssh.go (remove unused stat command)
- Fix errcheck warnings by explicitly ignoring best-effort operations
- Fix ineffassign warning in cmd_ansible.go

All golangci-lint checks now pass for deploy packages.

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* style(deploy): fix gofmt formatting

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* fix(deploy): use known_hosts for SSH host key verification

Address CodeQL security alert by using the user's known_hosts file
for SSH host key verification when available. Falls back to accepting
any key only when known_hosts doesn't exist (common in containerized
or ephemeral environments).

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* feat(ai,security,ide): add agentic MVP, security jobs, and Core IDE desktop app

Wire up AI infrastructure with unified pkg/ai package (metrics JSONL,
RAG integration), move RAG under `core ai rag`, add `core ai metrics`
command, and enrich task context with Qdrant documentation.

Add `--target` flag to all security commands for external repo scanning,
`core security jobs` for distributing findings as GitHub Issues, and
consistent error logging across scan/deps/alerts/secrets commands.

Add Core IDE Wails v3 desktop app with Angular 20 frontend, MCP bridge
(loopback-only HTTP server), WebSocket hub, and Claude Code bridge.
Production-ready with Lethean CIC branding, macOS code signing support,
and security hardening (origin validation, body size limits, URL scheme
checks, memory leak prevention, XSS mitigation).

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* fix: address PR review comments from CodeRabbit, Copilot, and Gemini

Fixes across 25 files addressing 46+ review comments:

- pkg/ai/metrics.go: handle error from Close() on writable file handle
- pkg/ansible: restore loop vars after loop, restore become settings,
  fix Upload with become=true and no password (use sudo -n), honour
  SSH timeout config, use E() helper for contextual errors, quote git
  refs in checkout commands
- pkg/rag: validate chunk config, guard negative-to-uint64 conversion,
  use E() helper for errors, add context timeout to Ollama HTTP calls
- pkg/deploy/python: fix exec.ExitError type assertion (was os.PathError),
  handle os.UserHomeDir() error
- pkg/build/buildcmd: use cmd.Context() instead of context.Background()
  for proper Ctrl+C cancellation
- install.bat: add curl timeouts, CRLF line endings, use --connect-timeout
  for archive downloads
- install.sh: use absolute path for version check in CI mode
- tools/rag: fix broken ingest.py function def, escape HTML in query.py,
  pin qdrant-client version, add markdown code block languages
- internal/cmd/rag: add chunk size validation, env override handling

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* fix(build): make release dry-run by default and remove darwin/amd64 target

Replace --dry-run (default false) with --we-are-go-for-launch (default
false) so `core build release` is safe by default. Remove darwin/amd64
from default build targets (arm64 only for macOS). Fix cmd_project.go
to use command context instead of context.Background().

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.5 <noreply@anthropic.com>
2026-02-04 00:49:57 +00:00
Snider
691908aa6c chore(io): migrate filesystem operations to io.Local abstraction (#247)
* feat(devops): migrate filesystem operations to io.Local abstraction

Migrate config.go:
- os.ReadFile → io.Local.Read

Migrate devops.go:
- os.Stat → io.Local.IsFile

Migrate images.go:
- os.MkdirAll → io.Local.EnsureDir
- os.Stat → io.Local.IsFile
- os.ReadFile → io.Local.Read
- os.WriteFile → io.Local.Write

Migrate test.go:
- os.ReadFile → io.Local.Read
- os.Stat → io.Local.IsFile

Migrate claude.go:
- os.Stat → io.Local.IsDir

Updated tests to reflect improved behavior:
- Manifest.Save() now creates parent directories
- hasFile() correctly returns false for directories

Part of #101 (io.Medium migration tracking issue).

Closes #107

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* chore(io): migrate remaining packages to io.Local abstraction

Migrate filesystem operations to use the io.Local abstraction for
improved security, testability, and consistency:

- pkg/cache: Replace os.ReadFile, WriteFile, Remove, RemoveAll with
  io.Local equivalents. io.Local.Write creates parent dirs automatically.
- pkg/agentic: Migrate config.go and context.go to use io.Local for
  reading config files and gathering file context.
- pkg/repos: Use io.Local.Read, Exists, IsDir, List for registry
  operations and git repo detection.
- pkg/release: Use io.Local for config loading, existence checks,
  and artifact discovery.
- pkg/devops/sources: Use io.Local.EnsureDir for CDN download.

All paths are converted to absolute using filepath.Abs() before
calling io.Local methods to handle relative paths correctly.

Closes #104, closes #106, closes #108, closes #111

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* chore(io): migrate pkg/cli and pkg/container to io.Local abstraction

Continue io.Medium migration for the remaining packages:

- pkg/cli/daemon.go: PIDFile Acquire/Release now use io.Local.Read,
  Delete, and Write for managing daemon PID files.
- pkg/container/state.go: LoadState and SaveState use io.Local for
  JSON state persistence. EnsureLogsDir uses io.Local.EnsureDir.
- pkg/container/templates.go: Template loading and directory scanning
  now use io.Local.IsFile, IsDir, Read, and List.
- pkg/container/linuxkit.go: Image validation uses io.Local.IsFile,
  log file check uses io.Local.IsFile. Streaming log file creation
  (os.Create) remains unchanged as io.Local doesn't support streaming.

Closes #105, closes #107

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* fix: address CodeRabbit feedback - use errors.E for context

Add contextual error handling using errors.E helper as suggested:
- config.go: Wrap LoadConfig read/parse errors
- images.go: Wrap NewImageManager, loadManifest, and Manifest.Save errors

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* fix(io): add contextual error handling with E() helper

Address CodeRabbit review feedback by wrapping raw errors with the
errors.E() helper to provide service/action context for debugging:

- pkg/cache: wrap cache.New, Get, Set, Delete, Clear errors
- pkg/devops/test: wrap LoadTestConfig path/read/parse errors
- pkg/cli/daemon: wrap PIDFile.Release path resolution error
- pkg/container/state: wrap LoadState/SaveState errors
- pkg/container/templates: wrap GetTemplate embedded/user read errors

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* chore(io): migrate internal/cmd/dev to io.Local abstraction

- Replace os.Stat with io.Local.Stat in cmd_file_sync.go
- Update test file to use io.Local.EnsureDir and io.Local.Write
- Add filepath.Abs for proper path resolution before io.Local calls

Closes #114

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* fix: use log.E instead of errors.E in cmd_file_sync

---------

Co-authored-by: Claude Opus 4.5 <noreply@anthropic.com>
2026-02-02 08:12:59 +00:00
Snider
89a789d170 feat(log): Logging enhancements (#181)
* feat(help): Add CLI help command

Fixes #136

* chore: remove binary

* feat(mcp): Add TCP transport

Fixes #126

* feat(io): Migrate pkg/mcp to use Medium abstraction

Fixes #103

* feat(io): batch implementation placeholder

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* feat(log): batch implementation placeholder

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* chore(io): Migrate internal/cmd/docs/* to Medium abstraction

Fixes #113

* chore(io): Migrate internal/cmd/dev/* to Medium abstraction

Fixes #114

* chore(io): Migrate internal/cmd/setup/* to Medium abstraction

* chore(io): Complete migration of internal/cmd/dev/* to Medium abstraction

* feat(io): extend Medium interface with Delete, Rename, List, Stat operations

Adds the following methods to the Medium interface:
- Delete(path) - remove a file or empty directory
- DeleteAll(path) - recursively remove a file or directory
- Rename(old, new) - move/rename a file or directory
- List(path) - list directory entries (returns []fs.DirEntry)
- Stat(path) - get file information (returns fs.FileInfo)
- Exists(path) - check if path exists
- IsDir(path) - check if path is a directory

Implements these methods in both local.Medium (using os package)
and MockMedium (in-memory for testing). Includes FileInfo and
DirEntry types for mock implementations.

This enables migration of direct os.* calls to the Medium
abstraction for consistent path validation and testability.

Refs #101

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* chore(io): Migrate internal/cmd/sdk, pkgcmd, and workspace to Medium abstraction

* chore(io): migrate internal/cmd/docs and internal/cmd/dev to Medium

- internal/cmd/docs: Replace os.Stat, os.ReadFile, os.WriteFile,
  os.MkdirAll, os.RemoveAll with io.Local equivalents
- internal/cmd/dev: Replace os.Stat, os.ReadFile, os.WriteFile,
  os.MkdirAll, os.ReadDir with io.Local equivalents
- Fix local.Medium to allow absolute paths when root is "/" for
  full filesystem access (io.Local use case)

Refs #113, #114

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* chore(io): migrate internal/cmd/setup to Medium abstraction

Migrated all direct os.* filesystem calls to use io.Local:
- cmd_repo.go: os.MkdirAll -> io.Local.EnsureDir, os.WriteFile -> io.Local.Write, os.Stat -> io.Local.IsFile
- cmd_bootstrap.go: os.MkdirAll -> io.Local.EnsureDir, os.Stat -> io.Local.IsDir/Exists, os.ReadDir -> io.Local.List
- cmd_registry.go: os.MkdirAll -> io.Local.EnsureDir, os.Stat -> io.Local.Exists
- cmd_ci.go: os.ReadFile -> io.Local.Read
- github_config.go: os.ReadFile -> io.Local.Read, os.Stat -> io.Local.Exists

Refs #116

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* feat(log): add error creation and log-and-return helpers

Implements issues #129 and #132:

- Add Err struct with Op, Msg, Err, Code fields for structured errors
- Add E(), Wrap(), WrapCode(), NewCode() for error creation
- Add Is(), As(), NewError(), Join() as stdlib wrappers
- Add Op(), ErrCode(), Message(), Root() for introspection
- Add LogError(), LogWarn(), Must() for combined log-and-return

Closes #129
Closes #132

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* fix(io): address Copilot review feedback

- Fix MockMedium.Rename: collect keys before mutating maps during iteration
- Fix .git checks to use Exists instead of List (handles worktrees/submodules)
- Fix cmd_sync.go: use DeleteAll for recursive directory removal

Files updated:
- pkg/io/io.go: safe map iteration in Rename
- internal/cmd/setup/cmd_bootstrap.go: Exists for .git checks
- internal/cmd/setup/cmd_registry.go: Exists for .git checks
- internal/cmd/pkgcmd/cmd_install.go: Exists for .git checks
- internal/cmd/pkgcmd/cmd_manage.go: Exists for .git checks
- internal/cmd/docs/cmd_sync.go: DeleteAll for recursive delete

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* fix(updater): resolve PkgVersion duplicate declaration

Remove var PkgVersion from updater.go since go generate creates
const PkgVersion in version.go. Track version.go in git to ensure
builds work without running go generate first.

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* style: fix formatting in internal/variants

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* refactor(io): simplify local Medium implementation

Rewrote to match the simpler TypeScript pattern:
- path() sanitizes and returns string directly
- Each method calls path() once
- No complex symlink validation
- Less code, less attack surface

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* fix(io): remove duplicate method declarations

Clean up the client.go file that had duplicate method declarations
from a bad cherry-pick merge. Now has 127 lines of simple, clean code.

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* test(io): fix traversal test to match sanitization behavior

The simplified path() sanitizes .. to . without returning errors.
Update test to verify sanitization works correctly.

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* test(mcp): update sandboxing tests for simplified Medium

The simplified io/local.Medium implementation:
- Sanitizes .. to . (no error, path is cleaned)
- Allows absolute paths through (caller validates if needed)
- Follows symlinks (no traversal blocking)

Update tests to match this simplified behavior.

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* fix: address CodeRabbit review feedback for PR #181

- internal/cmd/dev/cmd_file_sync.go: Add EnsureDir error handling before Copy
- internal/cmd/docs/cmd_sync.go: Add EnsureDir error handling for parent dirs
- internal/cmd/sdk/generators/go.go: Use log.E() helper instead of fmt.Errorf
- pkg/io/local/client.go: Handle Windows drive-root paths in path()
- pkg/log/errors.go: Avoid leading colon when Op is empty, preserve Code in Wrap
- pkg/log/errors_test.go: Rename tests to follow _Good/_Bad/_Ugly suffix pattern
- pkg/mcp/transport_tcp.go: Fix ctx cancellation, increase scanner buffer, use io.EOF

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.5 <noreply@anthropic.com>
2026-02-02 07:44:29 +00:00
Snider
4014fd2dc3 feat(errors): Unify errors and logging (#180)
* feat(help): Add CLI help command

Fixes #136

* chore: remove binary

* feat(mcp): Add TCP transport

Fixes #126

* feat(io): Migrate pkg/mcp to use Medium abstraction

Fixes #103

* feat(io): batch implementation placeholder

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* feat(errors): batch implementation placeholder

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* feat(log): batch implementation placeholder

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* chore(io): Migrate internal/cmd/docs/* to Medium abstraction

Fixes #113

* chore(io): Migrate internal/cmd/dev/* to Medium abstraction

Fixes #114

* chore(io): Migrate internal/cmd/setup/* to Medium abstraction

* chore(io): Complete migration of internal/cmd/dev/* to Medium abstraction

* feat(io): extend Medium interface with Delete, Rename, List, Stat operations

Adds the following methods to the Medium interface:
- Delete(path) - remove a file or empty directory
- DeleteAll(path) - recursively remove a file or directory
- Rename(old, new) - move/rename a file or directory
- List(path) - list directory entries (returns []fs.DirEntry)
- Stat(path) - get file information (returns fs.FileInfo)
- Exists(path) - check if path exists
- IsDir(path) - check if path is a directory

Implements these methods in both local.Medium (using os package)
and MockMedium (in-memory for testing). Includes FileInfo and
DirEntry types for mock implementations.

This enables migration of direct os.* calls to the Medium
abstraction for consistent path validation and testability.

Refs #101

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* chore(io): Migrate internal/cmd/sdk, pkgcmd, and workspace to Medium abstraction

* chore(io): migrate internal/cmd/docs and internal/cmd/dev to Medium

- internal/cmd/docs: Replace os.Stat, os.ReadFile, os.WriteFile,
  os.MkdirAll, os.RemoveAll with io.Local equivalents
- internal/cmd/dev: Replace os.Stat, os.ReadFile, os.WriteFile,
  os.MkdirAll, os.ReadDir with io.Local equivalents
- Fix local.Medium to allow absolute paths when root is "/" for
  full filesystem access (io.Local use case)

Refs #113, #114

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* chore(io): migrate internal/cmd/setup to Medium abstraction

Migrated all direct os.* filesystem calls to use io.Local:
- cmd_repo.go: os.MkdirAll -> io.Local.EnsureDir, os.WriteFile -> io.Local.Write, os.Stat -> io.Local.IsFile
- cmd_bootstrap.go: os.MkdirAll -> io.Local.EnsureDir, os.Stat -> io.Local.IsDir/Exists, os.ReadDir -> io.Local.List
- cmd_registry.go: os.MkdirAll -> io.Local.EnsureDir, os.Stat -> io.Local.Exists
- cmd_ci.go: os.ReadFile -> io.Local.Read
- github_config.go: os.ReadFile -> io.Local.Read, os.Stat -> io.Local.Exists

Refs #116

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* feat(log): add error creation and log-and-return helpers

Implements issues #129 and #132:

- Add Err struct with Op, Msg, Err, Code fields for structured errors
- Add E(), Wrap(), WrapCode(), NewCode() for error creation
- Add Is(), As(), NewError(), Join() as stdlib wrappers
- Add Op(), ErrCode(), Message(), Root() for introspection
- Add LogError(), LogWarn(), Must() for combined log-and-return

Closes #129
Closes #132

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* chore(errors): create deprecation alias pointing to pkg/log

Makes pkg/errors a thin compatibility layer that re-exports from pkg/log.
All error handling functions now have canonical implementations in pkg/log.

Migration guide in package documentation:
- errors.Error -> log.Err
- errors.E -> log.E
- errors.Code -> log.NewCode
- errors.New -> log.NewError

Fixes behavior consistency:
- E(op, msg, nil) now creates an error (for errors without cause)
- Wrap(nil, op, msg) returns nil (for conditional wrapping)
- WrapCode returns nil only when both err is nil AND code is empty

Closes #128

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* chore(log): migrate pkg/errors imports to pkg/log

Migrates all internal packages from pkg/errors to pkg/log:
- internal/cmd/monitor
- internal/cmd/qa
- internal/cmd/dev
- pkg/agentic

Closes #130

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* fix(io): address Copilot review feedback

- Fix MockMedium.Rename: collect keys before mutating maps during iteration
- Fix .git checks to use Exists instead of List (handles worktrees/submodules)
- Fix cmd_sync.go: use DeleteAll for recursive directory removal

Files updated:
- pkg/io/io.go: safe map iteration in Rename
- internal/cmd/setup/cmd_bootstrap.go: Exists for .git checks
- internal/cmd/setup/cmd_registry.go: Exists for .git checks
- internal/cmd/pkgcmd/cmd_install.go: Exists for .git checks
- internal/cmd/pkgcmd/cmd_manage.go: Exists for .git checks
- internal/cmd/docs/cmd_sync.go: DeleteAll for recursive delete

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* fix(updater): resolve PkgVersion duplicate declaration

Remove var PkgVersion from updater.go since go generate creates
const PkgVersion in version.go. Track version.go in git to ensure
builds work without running go generate first.

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* style: fix formatting in internal/variants

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* style: fix formatting across migrated files

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* refactor(io): simplify local Medium implementation

Rewrote to match the simpler TypeScript pattern:
- path() sanitizes and returns string directly
- Each method calls path() once
- No complex symlink validation
- Less code, less attack surface

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* fix(io): remove duplicate method declarations

Clean up the client.go file that had duplicate method declarations
from a bad cherry-pick merge. Now has 127 lines of simple, clean code.

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* test(io): fix traversal test to match sanitization behavior

The simplified path() sanitizes .. to . without returning errors.
Update test to verify sanitization works correctly.

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* test(mcp): update sandboxing tests for simplified Medium

The simplified io/local.Medium implementation:
- Sanitizes .. to . (no error, path is cleaned)
- Allows absolute paths through (caller validates if needed)
- Follows symlinks (no traversal blocking)

Update tests to match this simplified behavior.

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.5 <noreply@anthropic.com>
2026-02-02 06:48:40 +00:00
Snider
95a980bea1 feat: Batch implementation of Gemini issues (#176)
* feat(help): Add CLI help command

Fixes #136

* chore: remove binary

* feat(mcp): Add TCP transport

Fixes #126

* feat(io): Migrate pkg/mcp to use Medium abstraction

Fixes #103

* chore(io): Migrate internal/cmd/docs/* to Medium abstraction

Fixes #113

* chore(io): Migrate internal/cmd/dev/* to Medium abstraction

Fixes #114

* chore(io): Migrate internal/cmd/setup/* to Medium abstraction

* chore(io): Complete migration of internal/cmd/dev/* to Medium abstraction

* chore(io): Migrate internal/cmd/sdk, pkgcmd, and workspace to Medium abstraction

* style: fix formatting in internal/variants

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* refactor(io): simplify local Medium implementation

Rewrote to match the simpler TypeScript pattern:
- path() sanitizes and returns string directly
- Each method calls path() once
- No complex symlink validation
- Less code, less attack surface

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* test(mcp): update sandboxing tests for simplified Medium

The simplified io/local.Medium implementation:
- Sanitizes .. to . (no error, path is cleaned)
- Allows absolute paths through (caller validates if needed)
- Follows symlinks (no traversal blocking)

Update tests to match this simplified behavior.

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* fix(updater): resolve PkgVersion duplicate declaration

Remove var PkgVersion from updater.go since go generate creates
const PkgVersion in version.go. Track version.go in git to ensure
builds work without running go generate first.

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.5 <noreply@anthropic.com>
2026-02-02 04:20:18 +00:00
Snider
f47e8211fb feat(mcp): add workspace root validation to prevent path traversal (#100)
* feat(mcp): add workspace root validation to prevent path traversal

- Add workspaceRoot field to Service for restricting file operations
- Add WithWorkspaceRoot() option for configuring the workspace directory
- Add validatePath() helper to check paths are within workspace
- Apply validation to all file operation handlers
- Default to current working directory for security
- Add comprehensive tests for path validation

Closes #82

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* refactor: move CLI commands from pkg/ to internal/cmd/

- Move 18 CLI command packages to internal/cmd/ (not externally importable)
- Keep 16 library packages in pkg/ (externally importable)
- Update all import paths throughout codebase
- Cleaner separation between CLI logic and reusable libraries

CLI commands moved: ai, ci, dev, docs, doctor, gitcmd, go, monitor,
php, pkgcmd, qa, sdk, security, setup, test, updater, vm, workspace

Libraries remaining: agentic, build, cache, cli, container, devops,
errors, framework, git, i18n, io, log, mcp, process, release, repos

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* refactor(mcp): use pkg/io Medium for sandboxed file operations

Replace manual path validation with pkg/io.Medium for all file operations.
This delegates security (path traversal, symlink bypass) to the sandboxed
local.Medium implementation.

Changes:
- Add io.NewSandboxed() for creating sandboxed Medium instances
- Refactor MCP Service to use io.Medium instead of direct os.* calls
- Remove validatePath and resolvePathWithSymlinks functions
- Update tests to verify Medium-based behaviour

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* fix: correct import path and workflow references

- Fix pkg/io/io.go import from core-gui to core
- Update CI workflows to use internal/cmd/updater path

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* fix(security): address CodeRabbit review issues for path validation

- pkg/io/local: add symlink resolution and boundary-aware containment
  - Reject absolute paths in sandboxed Medium
  - Use filepath.EvalSymlinks to prevent symlink bypass attacks
  - Fix prefix check to prevent /tmp/root matching /tmp/root2

- pkg/mcp: fix resolvePath to validate and return errors
  - Changed resolvePath from (string) to (string, error)
  - Update deleteFile, renameFile, listDirectory, fileExists to handle errors
  - Changed New() to return (*Service, error) instead of *Service
  - Properly propagate option errors instead of silently discarding

- pkg/io: wrap errors with E() helper for consistent context
  - Copy() and MockMedium.Read() now use coreerr.E()

- tests: rename to use _Good/_Bad/_Ugly suffixes per coding guidelines
  - Fix hardcoded /tmp in TestPath to use t.TempDir()
  - Add TestResolvePath_Bad_SymlinkTraversal test

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* style: fix gofmt formatting

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* style: fix gofmt formatting across all files

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.5 <noreply@anthropic.com>
2026-02-01 21:59:34 +00:00