In preparation for in-repo configuration support, this updates
`WritableRoot::get_writable_roots_with_cwd()` to include the `.codex`
subfolder in `WritableRoot.read_only_subpaths`, if it exists, as we
already do for `.git`.
As noted, currently, like `.git`, `.codex` will only be read-only under
macOS Seatbelt, but we plan to bring support to other OSes, as well.
Updated the integration test in `seatbelt.rs` so that it actually
attempts to run the generated Seatbelt commands, verifying that:
- trying to write to `.codex/config.toml` in a writable root fails
- trying to write to `.git/hooks/pre-commit` in a writable root fails
- trying to write to the writable root containing the `.codex` and
`.git` subfolders succeeds
bef36f4ae7