Replace passthrough() + stdlib flag.FlagSet anti-pattern with proper
cobra integration. Every Run* function now takes a typed *Opts struct
and returns error. Flags registered via cli.StringFlag/IntFlag/etc.
Commands participate in Core lifecycle with full cobra flag parsing.
- 6 command groups: gen, score, data, export, infra, mon
- 25 commands converted, 0 passthrough() calls remain
- Delete passthrough() helper from lem.go
- Update export_test.go to use ExportOpts struct
Co-Authored-By: Virgil <virgil@lethean.io>
All imports updated from forge.lthn.ai/core/go/pkg/cli to
forge.lthn.ai/core/cli/pkg/cli. core/cli is now a direct dependency;
core/go becomes indirect.
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
ReadScorerOutput error was silently discarded during resume merge,
risking partial data loss on TOCTOU file changes. Also clean up
compare command construction to pass RunE directly to NewCommand.
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
Adds passthrough() helper with DisableFlagParsing=true so commands
that do their own flag.FlagSet parsing receive flags directly.
Without this, cobra rejects unknown flags like --model.
Also runs go mod tidy — core/go transitively pulls in cobra and
charmbracelet dependencies.
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
6 command groups (score, gen, data, export, mon, infra) with 25
commands. All pass through to existing lem.Run* functions via
the Core framework's cli package.
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
