Snider 56eda1a081 refactor: migrate all 25 commands from passthrough to cobra framework ... Replace passthrough() + stdlib flag.FlagSet anti-pattern with proper cobra integration. Every Run* function now takes a typed *Opts struct and returns error. Flags registered via cli.StringFlag/IntFlag/etc. Commands participate in Core lifecycle with full cobra flag parsing. - 6 command groups: gen, score, data, export, infra, mon - 25 commands converted, 0 passthrough() calls remain - Delete passthrough() helper from lem.go - Update export_test.go to use ExportOpts struct Co-Authored-By: Virgil <virgil@lethean.io>		2026-02-23 03:32:53 +00:00
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lem	refactor: migrate all 25 commands from passthrough to cobra framework	2026-02-23 03:32:53 +00:00